SNP Profiles of ICS 1 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CT	AC	GG	GT	AT	AA	CT	AG	GT	AG	TT	AC
1._ICS_1	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
2._ICS_1	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
3._ICS_1	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
4._ICS_1	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
5._ICS_1	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
6._RUQ_847	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
7._ICS_1	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
8._ICS_1	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
9._RUQ_847	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
10._RUQ_847	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
11._NA	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
12._NA	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
13._NA	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
14._NA	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
15._NA	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
16._NA	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
17._RUQ_847	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
18._RUQ_847	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
19._MITC-000297	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
20._ICS_1_Fld#_73_Plt#_2	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
21._ICS1	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
22._ICS_1	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	CT	AC	CT	AC	AA	CC	AA	AC	CT	CT	AA	GG
1._ICS_1	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
2._ICS_1	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
3._ICS_1	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
4._ICS_1	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
5._ICS_1	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
6._RUQ_847	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
7._ICS_1	_	_	_	_	_	CC	_	_	_	AC	_	_	_	_
8._ICS_1	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
9._RUQ_847	AG	_	_	_	_	CC	_	CC	_	AA	CT	_	_	_
10._RUQ_847	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
11._NA	AG	_	_	_	_	CC	_	CC	_	AC	CT	_	_	_
12._NA	AG	_	_	_	_	CC	_	CC	_	AC	CT	_	_	_
13._NA	AG	_	_	_	_	CC	_	CC	_	AC	CT	_	_	_
14._NA	AG	_	_	_	_	CC	_	CC	_	AC	CT	_	_	_
15._NA	AG	_	_	_	_	CC	_	CC	_	AC	CT	_	_	_
16._NA	AG	_	_	_	_	CC	_	_	_	AC	CT	_	_	_
17._RUQ_847	_	_	_	_	_	_	_	CC	_	AC	CT	_	_	_
18._RUQ_847	AG	_	_	_	_	CC	_	CC	_	AC	AG	_	_	_
19._MITC-000297	AG	_	_	_	_	CC	_	CC	_	AC	AG	_	_	_
20._ICS_1_Fld#_73_Plt#_2	AG	_	_	_	_	CC	_	CC	_	AC	AG	_	_	_
21._ICS1	_	_	_	_	_	_	_	CC	_	CC	CC	_	_	_
22._ICS_1	_	_	_	_	_	AA	_	CG	_	CC	_	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	CG	CT	GT	GG	CT	CT	AC	AA	TT	CG	AA	CG	AG
1._ICS_1	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
2._ICS_1	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
3._ICS_1	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
4._ICS_1	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
5._ICS_1	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
6._RUQ_847	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
7._ICS_1	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
8._ICS_1	GG	_	_	GT	_	_	_	_	_	_	_	_	_	AG
9._RUQ_847	_	_	CT	GT	GG	_	_	AC	_	_	CG	-	_	AG
10._RUQ_847	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
11._NA	GG	_	CC	GT	GG	_	_	AC	_	GG	CG	AA	_	AG
12._NA	GG	_	CC	GT	GG	_	_	AC	_	GG	CG	AA	_	AG
13._NA	GG	_	CC	GT	GG	_	_	AC	_	GG	CG	AA	_	AG
14._NA	GG	_	CC	GT	GG	_	_	AC	_	GG	CG	AA	_	AG
15._NA	GG	_	CC	GT	GG	_	_	AC	_	GG	CG	AA	_	AG
16._NA	GG	_	CC	GT	GG	_	_	AC	_	GG	CG	AA	_	AG
17._RUQ_847	_	_	_	_	_	_	_	_	_	_	CG	_	_	_
18._RUQ_847	_	_	_	AC	GG	_	_	AC	_	CC	CG	AA	_	AG
19._MITC-000297	_	_	_	AC	GG	_	_	AC	_	CC	CG	AA	_	AG
20._ICS_1_Fld#_73_Plt#_2	_	_	_	AC	GG	_	_	AC	_	CC	CG	AA	_	AG
21._ICS1	_	_	_	_	_	_	_	_	_	_	CG	_	_	_
22._ICS_1	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	CT	AT	CT	AA	TT	TT	GT	AC	CT	TT	TT	TT	GG
1._ICS_1	_	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
2._ICS_1	_	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
3._ICS_1	_	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
4._ICS_1	_	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
5._ICS_1	_	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
6._RUQ_847	_	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
7._ICS_1	_	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
8._ICS_1	_	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
9._RUQ_847	-	_	_	_	_	_	_	_	_	_	TT	_	_	_
10._RUQ_847	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
11._NA	CT	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
12._NA	CT	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
13._NA	CT	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
14._NA	CT	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
15._NA	CT	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
16._NA	CT	_	_	_	AA	_	TT	_	_	_	TT	_	_	_
17._RUQ_847	_	_	_	_	_	_	_	_	_	_	_	_	_	_
18._RUQ_847	_	_	_	_	AA	_	_	_	_	_	AA	_	_	_
19._MITC-000297	_	_	_	_	AA	_	_	_	_	_	AA	_	_	_
20._ICS_1_Fld#_73_Plt#_2	_	_	_	_	AA	_	_	_	_	_	AA	_	_	_
21._ICS1	_	_	_	_	_	_	_	_	_	_	_	_	_	_
22._ICS_1	_	_	_	_	GG	_	CC	_	_	_	TT	_	_	_

	57	58	59	60
_Input profile	GG	GG	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._ICS_1	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._ICS_1	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._ICS_1	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._ICS_1	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._ICS_1	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._RUQ_847	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._ICS_1	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._ICS_1	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._RUQ_847	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_847	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._NA	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._NA	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._NA	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._NA	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._NA	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._NA	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._RUQ_847	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._RUQ_847	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._MITC-000297	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._ICS_1_Fld#_73_Plt#_2	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._ICS1	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._ICS_1	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_1 RUQ_847

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._ICS_1

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

2._ICS_1

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

3._ICS_1

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

4._ICS_1

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

5._ICS_1

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._ICS_1 RUQ_847

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._ICS_1

95.8 %
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

8._ICS_1

95.8 %
12 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

9._ICS_1 RUQ_847

93.3 %
15 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._ICS_1 RUQ_847

92.3 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._ICS_1 NA

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

12._ICS_1 NA

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

13._ICS_1 NA

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

14._ICS_1 NA

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

15._ICS_1 NA

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

16._ICS_1 NA

90 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

17._ICS_1 RUQ_847

85.7 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

18._ICS_1 RUQ_847

67.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

19._ICS_1 MITC-000297

67.6 %
17 shared markers

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USDA-SHRS, United States of America

20._ICS_1 ICS_1_Fld#_73_Plt#_2

67.6 %
17 shared markers

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USDA-TARS, United States of America

Location: Field: 73, Tree: 2

21._ICS_1 ICS1

64.3 %
7 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

22._ICS_1

50 %
13 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1237	53	TcSNP1253	54	TcSNP1275	55	TcSNP1293
56	TcSNP1401	57	TcSNP1404	58	TcSNP1458	59	TcSNP1524	60	TcSNP1527